Amplicon-based sequencing of SARS-CoV-2: VA-DCLS-16295 - SRA

SRX26237508: Amplicon-based sequencing of SARS-CoV-2: VA-DCLS-16295
1 ILLUMINA (Illumina MiSeq) run: 245,469 spots, 47.9M bases, 20.9Mb downloads

Design: sequencing protocol description is ARTIC PCR-tiling of viral cDNA (V4.1), sequenced by Illumina MiSeq with DNA Flex library prep-kit. Only reads aligned to SARS-CoV-2 reference (NC_045512.2) retained.

Submitted by: Virginia Division of Consolidated Laboratory Services Sequencing Submission Group (DCLS-NGS)

Study: SARS-CoV-2_sequencing

PRJNA625551 • SRP256957 • All experiments • All runs

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Illumina generated NGS reads of the SARS-CoV-2 genome. The goal is to be able to track the spread and evolution of this virus state-wide, nationally, and internationally.

Sample:

SAMN43985768 • SRS22778776 • All experiments • All runs

Organism: Severe acute respiratory syndrome coronavirus 2

Library:

Name: VA-DCLS-16295

Instrument: Illumina MiSeq

Strategy: AMPLICON

Source: VIRAL RNA

Selection: cDNA

Layout: PAIRED

Runs: 1 run, 245,469 spots, 47.9M bases, 20.9Mb

Run	# of Spots	# of Bases	Size	Published
SRR30838263	245,469	47.9M	20.9Mb	2024-09-30

ID:: 35402537

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